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Complete Chloroplast Genomes of Ampelopsis humulifolia and Ampelopsis japonica: Molecular Structure, Comparative Analysis, and Phylogenetic Analysis

Abstract:
Ampelopsis humulifolia (A. humulifolia) and Ampelopsis japonica (A. japonica), which belong to the family Vitaceae, are valuably used as medicinal plants. The chloroplast (cp) genomes have been recognized as a convincing data for marker selection and phylogenetic studies. Therefore, in this study we reported the complete cp genome sequences of two Ampelopsis species. Results showed that the cp genomes of A. humulifolia and A. japonica were 161,724 and 161,430 bp in length, respectively, with 37.3% guanine-cytosine (GC) content. A total of 114 unique genes were identified in each cp genome, comprising 80 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. We determined 95 and 99 small sequence repeats (SSRs) in A. humulifolia and A. japonica, respectively. The location and distribution of long repeats in the two cp genomes were identified. A highly divergent region of psbZ (Photosystem II reaction center protein Z) -trnG (tRNA-Glycine) was found and could be treated as a potential marker for Vitaceae, and then the corresponding primers were designed. Additionally, phylogenetic analysis showed that Vitis was closer to Tetrastigma than Ampelopsis. In general, this study provides valuable genetic resources for DNA barcoding marker identification and phylogenetic analyses of Ampelopsis.
Author Listing: Xiaolei Yu;Wei Tan;Huanyu Zhang;Han Gao;Wenxiu Wang;Xiaoxuan Tian
Volume: 8
Pages: None
DOI: 10.3390/plants8100410
Language: English
Journal: Plants

Plants-Basel

PLANTS-BASEL

影响因子:4.1
是否综述期刊:否
是否OA:是
是否预警:不在预警名单内
发行时间:2012
ISSN:2223-7747
发刊频率:-
收录数据库:SCIE/Scopus收录/DOAJ开放期刊
出版国家/地区:Switzerland
出版社:MDPI (Basel, Switzerland)

期刊介绍

Plants (ISSN 2223-7747), is an international and multidisciplinary scientific open access journal that covers all key areas of plant science. It publishes review articles, regular research articles, communications, and short notes in the fields of structural, functional and experimental botany. In addition to fundamental disciplines such as morphology, systematics, physiology and ecology of plants, the journal welcomes all types of articles in the field of applied plant science.

《植物》(ISSN 2223-7747)是一本国际性的多学科科学开放获取期刊,涵盖了植物科学的所有关键领域。它发表结构、功能和实验植物学领域的评论文章、定期研究文章、通讯和简短笔记。除了植物形态学、系统学、生理学和生态学等基础学科外,该杂志还欢迎应用植物科学领域的所有类型的文章。

年发文量 3569
国人发稿量 1060
国人发文占比 29.7%
自引率 9.8%
平均录取率 -
平均审稿周期 平均15.4天11 Weeks
版面费 -
偏重研究方向 Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
期刊官网 https://www.mdpi.com/journal/plants
投稿链接 https://susy.mdpi.com/user/manuscripts/upload?form[journal_id]=137

质量指标占比

研究类文章占比 OA被引用占比 撤稿占比 出版后修正文章占比
89.89% 99.95% - -

相关指数

影响因子
影响因子
年发文量
自引率
Cite Score

预警情况

时间 预警情况
2025年03月发布的2025版 不在预警名单中
2024年02月发布的2024版 不在预警名单中
2023年01月发布的2023版 不在预警名单中
2021年12月发布的2021版 不在预警名单中
2020年12月发布的2020版 预警等级

JCR分区 WOS分区等级:Q1区

版本 按学科 分区
WOS期刊SCI分区
(2021-2022年最新版)
PLANT SCIENCES Q1

中科院分区

版本 大类学科 小类学科 Top期刊 综述期刊
生物学
2区
PLANT SCIENCES
植物科学
2区
2021年12月
基础版
生物
3区
PLANT SCIENCES
植物科学
3区
2021年12月
升级版
生物学
3区
PLANT SCIENCES
植物科学
3区
2020年12月
旧的升级版
生物学
4区
PLANT SCIENCES
植物科学
3区
2022年12月
最新升级版
生物学
2区
PLANT SCIENCES
植物科学
2区